The former England striker had a 14-month spell at Elland Road and as part of the agreement which took him to Manchester City, Leeds agreed to keep paying Fowler some of his wages, to make up for the shortfall which came with moving to Eastlands.
Leeds chief operating officer Shaun Harvey told the Yorkshire Post that agreement would stand until the summer, the time Fowler's contract at Leeds was originally due to expire.
Harvey said: "Our agreement is with Robbie Fowler and as such there will be no change.
"Leeds are not going to be relieved of any financial burden, the deal was agreed that Leeds would continue to pay Robbie Fowler until the middle of 2006 and that deal stands no matter where he plays."